RNF126 protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RNF126

Ring finger protein 126. (351 aa)

Predicted Functional Partners:

GET4

0.958

BAG6

0.954

GET3

0.910

ENSNVIP00000030368

0.886

UBL4A

0.731

ENSNVIP00000008604

0.728

OTUB1

0.728

ENSNVIP00000006603

0.711

ENSNVIP00000018124

0.711

ENSNVIP00000032291

0.711

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAG6	ENSNVIP00000008604	ENSNVIP00000020724	ENSNVIP00000008604	BCL2 associated athanogene 6.	annotation not available	0.534
BAG6	GET3	ENSNVIP00000020724	ENSNVIP00000004506	BCL2 associated athanogene 6.	Guided entry of tail-anchored proteins factor 3, ATPase.	0.973
BAG6	GET4	ENSNVIP00000020724	ENSNVIP00000004159	BCL2 associated athanogene 6.	Guided entry of tail-anchored proteins factor 4.	0.992
BAG6	RNF126	ENSNVIP00000020724	ENSNVIP00000002729	BCL2 associated athanogene 6.	Ring finger protein 126.	0.954
BAG6	UBL4A	ENSNVIP00000020724	ENSNVIP00000019277	BCL2 associated athanogene 6.	Ubiquitin like 4A.	0.984
ENSNVIP00000006603	ENSNVIP00000008604	ENSNVIP00000006603	ENSNVIP00000008604	annotation not available	annotation not available	0.866
ENSNVIP00000006603	ENSNVIP00000030368	ENSNVIP00000006603	ENSNVIP00000030368	annotation not available	Ubiquitin conjugating enzyme E2 D1.	0.889
ENSNVIP00000006603	ENSNVIP00000032291	ENSNVIP00000006603	ENSNVIP00000032291	annotation not available	annotation not available	0.581
ENSNVIP00000006603	OTUB1	ENSNVIP00000006603	ENSNVIP00000025772	annotation not available	OTU deubiquitinase, ubiquitin aldehyde binding 1.	0.833
ENSNVIP00000006603	RNF126	ENSNVIP00000006603	ENSNVIP00000002729	annotation not available	Ring finger protein 126.	0.711
ENSNVIP00000008604	BAG6	ENSNVIP00000008604	ENSNVIP00000020724	annotation not available	BCL2 associated athanogene 6.	0.534
ENSNVIP00000008604	ENSNVIP00000006603	ENSNVIP00000008604	ENSNVIP00000006603	annotation not available	annotation not available	0.866
ENSNVIP00000008604	ENSNVIP00000018124	ENSNVIP00000008604	ENSNVIP00000018124	annotation not available	annotation not available	0.866
ENSNVIP00000008604	ENSNVIP00000030368	ENSNVIP00000008604	ENSNVIP00000030368	annotation not available	Ubiquitin conjugating enzyme E2 D1.	0.936
ENSNVIP00000008604	ENSNVIP00000032291	ENSNVIP00000008604	ENSNVIP00000032291	annotation not available	annotation not available	0.866
ENSNVIP00000008604	GET4	ENSNVIP00000008604	ENSNVIP00000004159	annotation not available	Guided entry of tail-anchored proteins factor 4.	0.433
ENSNVIP00000008604	OTUB1	ENSNVIP00000008604	ENSNVIP00000025772	annotation not available	OTU deubiquitinase, ubiquitin aldehyde binding 1.	0.867
ENSNVIP00000008604	RNF126	ENSNVIP00000008604	ENSNVIP00000002729	annotation not available	Ring finger protein 126.	0.728
ENSNVIP00000018124	ENSNVIP00000008604	ENSNVIP00000018124	ENSNVIP00000008604	annotation not available	annotation not available	0.866
ENSNVIP00000018124	ENSNVIP00000030368	ENSNVIP00000018124	ENSNVIP00000030368	annotation not available	Ubiquitin conjugating enzyme E2 D1.	0.889