C12orf54 protein (Neovison vison) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

C12orf54

Chromosome 12 open reading frame 54. (119 aa)

Predicted Functional Partners:

TAF1A

0.749

GLRA3

0.610

ENSNVIP00000031124

0.510

ENSNVIP00000031125

0.510

ENSNVIP00000003154

0.488

MORF4L2

0.488

GLRA1

0.410

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C12orf54	ENSNVIP00000003154	ENSNVIP00000003149	ENSNVIP00000003154	Chromosome 12 open reading frame 54.	annotation not available	0.488
C12orf54	ENSNVIP00000031124	ENSNVIP00000003149	ENSNVIP00000031124	Chromosome 12 open reading frame 54.	annotation not available	0.510
C12orf54	ENSNVIP00000031125	ENSNVIP00000003149	ENSNVIP00000031125	Chromosome 12 open reading frame 54.	annotation not available	0.510
C12orf54	GLRA1	ENSNVIP00000003149	ENSNVIP00000026308	Chromosome 12 open reading frame 54.	Glycine receptor alpha 1.	0.410
C12orf54	GLRA3	ENSNVIP00000003149	ENSNVIP00000031868	Chromosome 12 open reading frame 54.	Glycine receptor alpha 3.	0.610
C12orf54	MORF4L2	ENSNVIP00000003149	ENSNVIP00000020464	Chromosome 12 open reading frame 54.	Mortality factor 4 like 2.	0.488
C12orf54	TAF1A	ENSNVIP00000003149	ENSNVIP00000022536	Chromosome 12 open reading frame 54.	TATA-box binding protein associated factor, RNA polymerase I subunit A.	0.749
ENSNVIP00000003154	C12orf54	ENSNVIP00000003154	ENSNVIP00000003149	annotation not available	Chromosome 12 open reading frame 54.	0.488
ENSNVIP00000003154	MORF4L2	ENSNVIP00000003154	ENSNVIP00000020464	annotation not available	Mortality factor 4 like 2.	0.547
ENSNVIP00000003154	TAF1A	ENSNVIP00000003154	ENSNVIP00000022536	annotation not available	TATA-box binding protein associated factor, RNA polymerase I subunit A.	0.494
ENSNVIP00000031124	C12orf54	ENSNVIP00000031124	ENSNVIP00000003149	annotation not available	Chromosome 12 open reading frame 54.	0.510
ENSNVIP00000031124	TAF1A	ENSNVIP00000031124	ENSNVIP00000022536	annotation not available	TATA-box binding protein associated factor, RNA polymerase I subunit A.	0.517
ENSNVIP00000031125	C12orf54	ENSNVIP00000031125	ENSNVIP00000003149	annotation not available	Chromosome 12 open reading frame 54.	0.510
ENSNVIP00000031125	TAF1A	ENSNVIP00000031125	ENSNVIP00000022536	annotation not available	TATA-box binding protein associated factor, RNA polymerase I subunit A.	0.517
GLRA1	C12orf54	ENSNVIP00000026308	ENSNVIP00000003149	Glycine receptor alpha 1.	Chromosome 12 open reading frame 54.	0.410
GLRA1	GLRA3	ENSNVIP00000026308	ENSNVIP00000031868	Glycine receptor alpha 1.	Glycine receptor alpha 3.	0.882
GLRA1	TAF1A	ENSNVIP00000026308	ENSNVIP00000022536	Glycine receptor alpha 1.	TATA-box binding protein associated factor, RNA polymerase I subunit A.	0.410
GLRA3	C12orf54	ENSNVIP00000031868	ENSNVIP00000003149	Glycine receptor alpha 3.	Chromosome 12 open reading frame 54.	0.610
GLRA3	GLRA1	ENSNVIP00000031868	ENSNVIP00000026308	Glycine receptor alpha 3.	Glycine receptor alpha 1.	0.882
GLRA3	TAF1A	ENSNVIP00000031868	ENSNVIP00000022536	Glycine receptor alpha 3.	TATA-box binding protein associated factor, RNA polymerase I subunit A.	0.610