STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DHX40DEAH-box helicase 40. (731 aa)    
Predicted Functional Partners:
PPIL4
Peptidylprolyl isomerase like 4.
   
 0.968
USP7
Ubiquitin specific peptidase 7.
    
 
 0.891
ESF1
ESF1 nucleolar pre-rRNA processing protein homolog.
   
 
 0.887
ENSNVIP00000001400
annotation not available
   
 0.816
UTP3
UTP3 small subunit processome component.
   
 0.800
CWC22
CWC22 spliceosome associated protein homolog.
   
 0.799
DDX49
DEAD-box helicase 49.
   
 0.796
SLU7
SLU7 homolog, splicing factor.
   
 0.789
NOP14
NOP14 nucleolar protein.
   
 0.771
IMP3
IMP U3 small nucleolar ribonucleoprotein 3.
   
 0.770
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.