SMG8 protein (Neovison vison) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

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[Homology]

Score

SMG8

SMG8 nonsense mediated mRNA decay factor. (991 aa)

Predicted Functional Partners:

SMG1

0.997

SMG9

0.997

SMG5

0.907

SMG6

0.900

RBM8A

0.899

SMG7

0.860

ENSNVIP00000030831

0.828

DCP1A

0.825

MTOR

0.795

PRKDC

0.791

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCP1A	RBM8A	ENSNVIP00000029665	ENSNVIP00000031483	Decapping mRNA 1A.	RNA binding motif protein 8A.	0.516
DCP1A	SMG1	ENSNVIP00000029665	ENSNVIP00000023589	Decapping mRNA 1A.	SMG1 nonsense mediated mRNA decay associated PI3K related kinase.	0.656
DCP1A	SMG5	ENSNVIP00000029665	ENSNVIP00000026688	Decapping mRNA 1A.	SMG5 nonsense mediated mRNA decay factor.	0.849
DCP1A	SMG6	ENSNVIP00000029665	ENSNVIP00000014832	Decapping mRNA 1A.	SMG6 nonsense mediated mRNA decay factor.	0.855
DCP1A	SMG7	ENSNVIP00000029665	ENSNVIP00000015983	Decapping mRNA 1A.	SMG7 nonsense mediated mRNA decay factor.	0.818
DCP1A	SMG8	ENSNVIP00000029665	ENSNVIP00000003361	Decapping mRNA 1A.	SMG8 nonsense mediated mRNA decay factor.	0.825
DCP1A	SMG9	ENSNVIP00000029665	ENSNVIP00000032066	Decapping mRNA 1A.	SMG9 nonsense mediated mRNA decay factor.	0.741
ENSNVIP00000030831	SMG8	ENSNVIP00000030831	ENSNVIP00000003361	annotation not available	SMG8 nonsense mediated mRNA decay factor.	0.828
MTOR	PRKDC	ENSNVIP00000010130	ENSNVIP00000029733	Mechanistic target of rapamycin kinase.	Protein kinase, DNA-activated, catalytic subunit.	0.535
MTOR	RBM8A	ENSNVIP00000010130	ENSNVIP00000031483	Mechanistic target of rapamycin kinase.	RNA binding motif protein 8A.	0.552
MTOR	SMG1	ENSNVIP00000010130	ENSNVIP00000023589	Mechanistic target of rapamycin kinase.	SMG1 nonsense mediated mRNA decay associated PI3K related kinase.	0.531
MTOR	SMG5	ENSNVIP00000010130	ENSNVIP00000026688	Mechanistic target of rapamycin kinase.	SMG5 nonsense mediated mRNA decay factor.	0.468
MTOR	SMG6	ENSNVIP00000010130	ENSNVIP00000014832	Mechanistic target of rapamycin kinase.	SMG6 nonsense mediated mRNA decay factor.	0.450
MTOR	SMG7	ENSNVIP00000010130	ENSNVIP00000015983	Mechanistic target of rapamycin kinase.	SMG7 nonsense mediated mRNA decay factor.	0.450
MTOR	SMG8	ENSNVIP00000010130	ENSNVIP00000003361	Mechanistic target of rapamycin kinase.	SMG8 nonsense mediated mRNA decay factor.	0.795
MTOR	SMG9	ENSNVIP00000010130	ENSNVIP00000032066	Mechanistic target of rapamycin kinase.	SMG9 nonsense mediated mRNA decay factor.	0.787
PRKDC	MTOR	ENSNVIP00000029733	ENSNVIP00000010130	Protein kinase, DNA-activated, catalytic subunit.	Mechanistic target of rapamycin kinase.	0.535
PRKDC	RBM8A	ENSNVIP00000029733	ENSNVIP00000031483	Protein kinase, DNA-activated, catalytic subunit.	RNA binding motif protein 8A.	0.552
PRKDC	SMG5	ENSNVIP00000029733	ENSNVIP00000026688	Protein kinase, DNA-activated, catalytic subunit.	SMG5 nonsense mediated mRNA decay factor.	0.450
PRKDC	SMG6	ENSNVIP00000029733	ENSNVIP00000014832	Protein kinase, DNA-activated, catalytic subunit.	SMG6 nonsense mediated mRNA decay factor.	0.450