CUX1 protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CUX1

Cut like homeobox 1. (1514 aa)

Predicted Functional Partners:

SATB2

0.778

TBR1

0.754

PAX6

0.744

RELN

0.685

SOX2

0.657

SOX3

0.657

GOSR1

0.651

ENSNVIP00000027176

0.605

ZNF451

0.604

FEZF2

0.597

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUX1	ENSNVIP00000027176	ENSNVIP00000003362	ENSNVIP00000027176	Cut like homeobox 1.	annotation not available	0.605
CUX1	FEZF2	ENSNVIP00000003362	ENSNVIP00000014980	Cut like homeobox 1.	FEZ family zinc finger 2.	0.597
CUX1	GOSR1	ENSNVIP00000003362	ENSNVIP00000007472	Cut like homeobox 1.	Golgi SNAP receptor complex member 1.	0.651
CUX1	PAX6	ENSNVIP00000003362	ENSNVIP00000006317	Cut like homeobox 1.	Paired box 6.	0.744
CUX1	RELN	ENSNVIP00000003362	ENSNVIP00000028527	Cut like homeobox 1.	Reelin.	0.685
CUX1	SATB2	ENSNVIP00000003362	ENSNVIP00000013145	Cut like homeobox 1.	SATB homeobox 2.	0.778
CUX1	SOX2	ENSNVIP00000003362	ENSNVIP00000021128	Cut like homeobox 1.	SRY-box transcription factor 2.	0.657
CUX1	SOX3	ENSNVIP00000003362	ENSNVIP00000029362	Cut like homeobox 1.	SRY-box transcription factor 3.	0.657
CUX1	TBR1	ENSNVIP00000003362	ENSNVIP00000008850	Cut like homeobox 1.	T-box brain transcription factor 1.	0.754
CUX1	ZNF451	ENSNVIP00000003362	ENSNVIP00000008433	Cut like homeobox 1.	Zinc finger protein 451.	0.604
ENSNVIP00000027176	CUX1	ENSNVIP00000027176	ENSNVIP00000003362	annotation not available	Cut like homeobox 1.	0.605
ENSNVIP00000027176	PAX6	ENSNVIP00000027176	ENSNVIP00000006317	annotation not available	Paired box 6.	0.696
ENSNVIP00000027176	RELN	ENSNVIP00000027176	ENSNVIP00000028527	annotation not available	Reelin.	0.411
ENSNVIP00000027176	SATB2	ENSNVIP00000027176	ENSNVIP00000013145	annotation not available	SATB homeobox 2.	0.637
ENSNVIP00000027176	SOX2	ENSNVIP00000027176	ENSNVIP00000021128	annotation not available	SRY-box transcription factor 2.	0.408
ENSNVIP00000027176	SOX3	ENSNVIP00000027176	ENSNVIP00000029362	annotation not available	SRY-box transcription factor 3.	0.408
ENSNVIP00000027176	TBR1	ENSNVIP00000027176	ENSNVIP00000008850	annotation not available	T-box brain transcription factor 1.	0.745
FEZF2	CUX1	ENSNVIP00000014980	ENSNVIP00000003362	FEZ family zinc finger 2.	Cut like homeobox 1.	0.597
FEZF2	SATB2	ENSNVIP00000014980	ENSNVIP00000013145	FEZ family zinc finger 2.	SATB homeobox 2.	0.757
FEZF2	TBR1	ENSNVIP00000014980	ENSNVIP00000008850	FEZ family zinc finger 2.	T-box brain transcription factor 1.	0.789