STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIG4DNA ligase 4. (911 aa)    
Predicted Functional Partners:
ENSNVIP00000006795
X-ray repair cross complementing 5.
   
 0.991
XRCC6
X-ray repair cross complementing 6.
   
 0.990
DCLRE1C
DNA cross-link repair 1C.
   
 0.985
PRKDC
Protein kinase, DNA-activated, catalytic subunit.
    
 0.982
ENSNVIP00000029461
Non-homologous end joining factor 1.
    
 0.964
ENSNVIP00000029979
X-ray repair cross complementing 4.
   
 0.956
PAXX
PAXX non-homologous end joining factor.
    
 0.954
ENSNVIP00000023376
annotation not available
    
 
 0.922
ENSNVIP00000023385
annotation not available
    
 
 0.922
POLL
DNA polymerase lambda.
  
 0.914
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.