GSX1 protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-expression

Experiments

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[Homology]

Score

GSX1

GS homeobox 1. (262 aa)

Predicted Functional Partners:

ASCL1

0.681

SP9

0.576

SP8

0.498

OLIG3

0.481

LHX8

0.461

LHX6

0.461

OLIG2

0.457

PROKR1

0.448

PROKR2

0.448

IRX3

0.447

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASCL1	GSX1	ENSNVIP00000013222	ENSNVIP00000003560	Achaete-scute family bHLH transcription factor 1.	GS homeobox 1.	0.681
ASCL1	OLIG2	ENSNVIP00000013222	ENSNVIP00000007249	Achaete-scute family bHLH transcription factor 1.	Oligodendrocyte transcription factor 2.	0.753
ASCL1	SP9	ENSNVIP00000013222	ENSNVIP00000010643	Achaete-scute family bHLH transcription factor 1.	Sp9 transcription factor.	0.515
GSX1	ASCL1	ENSNVIP00000003560	ENSNVIP00000013222	GS homeobox 1.	Achaete-scute family bHLH transcription factor 1.	0.681
GSX1	IRX3	ENSNVIP00000003560	ENSNVIP00000021952	GS homeobox 1.	Iroquois homeobox 3.	0.447
GSX1	LHX6	ENSNVIP00000003560	ENSNVIP00000013372	GS homeobox 1.	LIM homeobox 6.	0.461
GSX1	LHX8	ENSNVIP00000003560	ENSNVIP00000013236	GS homeobox 1.	LIM homeobox 8.	0.461
GSX1	OLIG2	ENSNVIP00000003560	ENSNVIP00000007249	GS homeobox 1.	Oligodendrocyte transcription factor 2.	0.457
GSX1	OLIG3	ENSNVIP00000003560	ENSNVIP00000024761	GS homeobox 1.	Oligodendrocyte transcription factor 3.	0.481
GSX1	PROKR1	ENSNVIP00000003560	ENSNVIP00000023396	GS homeobox 1.	Prokineticin receptor 1.	0.448
GSX1	PROKR2	ENSNVIP00000003560	ENSNVIP00000024302	GS homeobox 1.	Prokineticin receptor 2.	0.448
GSX1	SP8	ENSNVIP00000003560	ENSNVIP00000017924	GS homeobox 1.	Sp8 transcription factor.	0.498
GSX1	SP9	ENSNVIP00000003560	ENSNVIP00000010643	GS homeobox 1.	Sp9 transcription factor.	0.576
IRX3	GSX1	ENSNVIP00000021952	ENSNVIP00000003560	Iroquois homeobox 3.	GS homeobox 1.	0.447
IRX3	OLIG3	ENSNVIP00000021952	ENSNVIP00000024761	Iroquois homeobox 3.	Oligodendrocyte transcription factor 3.	0.439
LHX6	GSX1	ENSNVIP00000013372	ENSNVIP00000003560	LIM homeobox 6.	GS homeobox 1.	0.461
LHX8	GSX1	ENSNVIP00000013236	ENSNVIP00000003560	LIM homeobox 8.	GS homeobox 1.	0.461
OLIG2	ASCL1	ENSNVIP00000007249	ENSNVIP00000013222	Oligodendrocyte transcription factor 2.	Achaete-scute family bHLH transcription factor 1.	0.753
OLIG2	GSX1	ENSNVIP00000007249	ENSNVIP00000003560	Oligodendrocyte transcription factor 2.	GS homeobox 1.	0.457
OLIG3	GSX1	ENSNVIP00000024761	ENSNVIP00000003560	Oligodendrocyte transcription factor 3.	GS homeobox 1.	0.481