STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTUD6BOTU deubiquitinase 6B. (324 aa)    
Predicted Functional Partners:
OTUB1
OTU deubiquitinase, ubiquitin aldehyde binding 1.
    
 
 0.781
OTUB2
OTU deubiquitinase, ubiquitin aldehyde binding 2.
    
 
 0.692
RPS8
Ribosomal protein S8.
   
 
 0.633
USP45
Ubiquitin specific peptidase 45.
      
 0.595
VCPIP1
Valosin containing protein interacting protein 1.
    
 
 0.557
USP10
Ubiquitin specific peptidase 10.
   
 
 0.556
CDK16
Cyclin dependent kinase 16.
   
  
 0.555
USP7
Ubiquitin specific peptidase 7.
   
 
 0.550
USP11
Ubiquitin specific peptidase 11.
      
 0.537
USP4
Ubiquitin specific peptidase 4.
      
 0.537
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.