STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSNVIP00000003885SHQ1, H/ACA ribonucleoprotein assembly factor. (590 aa)    
Predicted Functional Partners:
DKC1
Dyskerin pseudouridine synthase 1.
   
 0.998
TRUB1
TruB pseudouridine synthase family member 1.
   
 0.964
GAR1
GAR1 ribonucleoprotein.
   
 
 0.949
NOP10
NOP10 ribonucleoprotein.
   
 
 0.927
TRUB2
TruB pseudouridine synthase family member 2.
   
 0.918
ENSNVIP00000030061
NHP2 ribonucleoprotein.
   
 
 0.773
UBAP2
Ubiquitin associated protein 2.
   
  
 0.708
PDZRN3
PDZ domain containing ring finger 3.
      
 0.708
ENSNVIP00000028003
FCH and double SH3 domains 2.
      
 0.701
RANGRF
RAN guanine nucleotide release factor.
      
 0.699
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.