PPIF protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

PPIF

Peptidylprolyl isomerase F. (209 aa)

Predicted Functional Partners:

SLC25A31

0.957

SLC25A4

0.930

ENSNVIP00000019421

0.907

ENSNVIP00000021644

0.907

ENSNVIP00000005643

0.895

ENSNVIP00000019654

0.895

VDAC2

0.887

ENSNVIP00000015564

0.887

CCR5

0.885

ENSNVIP00000002867

0.884

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCR5	PPIF	ENSNVIP00000027698	ENSNVIP00000004001	C-C motif chemokine receptor 5 (gene/pseudogene).	Peptidylprolyl isomerase F.	0.885
ENSNVIP00000002867	ENSNVIP00000005643	ENSNVIP00000002867	ENSNVIP00000005643	annotation not available	annotation not available	0.828
ENSNVIP00000002867	ENSNVIP00000015564	ENSNVIP00000002867	ENSNVIP00000015564	annotation not available	annotation not available	0.990
ENSNVIP00000002867	ENSNVIP00000019421	ENSNVIP00000002867	ENSNVIP00000019421	annotation not available	annotation not available	0.992
ENSNVIP00000002867	ENSNVIP00000019654	ENSNVIP00000002867	ENSNVIP00000019654	annotation not available	annotation not available	0.828
ENSNVIP00000002867	ENSNVIP00000021644	ENSNVIP00000002867	ENSNVIP00000021644	annotation not available	annotation not available	0.992
ENSNVIP00000002867	PPIF	ENSNVIP00000002867	ENSNVIP00000004001	annotation not available	Peptidylprolyl isomerase F.	0.884
ENSNVIP00000002867	SLC25A31	ENSNVIP00000002867	ENSNVIP00000011964	annotation not available	Solute carrier family 25 member 31.	0.892
ENSNVIP00000002867	SLC25A4	ENSNVIP00000002867	ENSNVIP00000007104	annotation not available	Solute carrier family 25 member 4.	0.885
ENSNVIP00000002867	VDAC2	ENSNVIP00000002867	ENSNVIP00000010124	annotation not available	Voltage dependent anion channel 2.	0.989
ENSNVIP00000005643	ENSNVIP00000002867	ENSNVIP00000005643	ENSNVIP00000002867	annotation not available	annotation not available	0.828
ENSNVIP00000005643	ENSNVIP00000015564	ENSNVIP00000005643	ENSNVIP00000015564	annotation not available	annotation not available	0.828
ENSNVIP00000005643	ENSNVIP00000019421	ENSNVIP00000005643	ENSNVIP00000019421	annotation not available	annotation not available	0.846
ENSNVIP00000005643	ENSNVIP00000021644	ENSNVIP00000005643	ENSNVIP00000021644	annotation not available	annotation not available	0.846
ENSNVIP00000005643	PPIF	ENSNVIP00000005643	ENSNVIP00000004001	annotation not available	Peptidylprolyl isomerase F.	0.895
ENSNVIP00000005643	SLC25A31	ENSNVIP00000005643	ENSNVIP00000011964	annotation not available	Solute carrier family 25 member 31.	0.848
ENSNVIP00000005643	VDAC2	ENSNVIP00000005643	ENSNVIP00000010124	annotation not available	Voltage dependent anion channel 2.	0.828
ENSNVIP00000015564	ENSNVIP00000002867	ENSNVIP00000015564	ENSNVIP00000002867	annotation not available	annotation not available	0.990
ENSNVIP00000015564	ENSNVIP00000005643	ENSNVIP00000015564	ENSNVIP00000005643	annotation not available	annotation not available	0.828
ENSNVIP00000015564	ENSNVIP00000019421	ENSNVIP00000015564	ENSNVIP00000019421	annotation not available	annotation not available	0.992