Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCDC88ACoiled-coil domain containing 88A. (1874 aa)    
Predicted Functional Partners:
DYNC1H1
Dynein cytoplasmic 1 heavy chain 1.
    
 
 0.682
GNAI2
G protein subunit alpha i2.
    
 
 0.675
GNAI1
G protein subunit alpha i1.
    
 
 0.675
GNAI3
G protein subunit alpha i3.
    
 
 0.675
ENSNVIP00000001206
annotation not available
    
   0.665
EGFR
Epidermal growth factor receptor.
    
 
 0.639
RND1
Rho family GTPase 1.
     
 0.560
BTBD7
BTB domain containing 7.
      
 0.488
ARSG
Arylsulfatase G.
      
 0.488
ERGIC2
ERGIC and golgi 2.
      
 0.488
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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