Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
TTC38Tetratricopeptide repeat domain 38. (469 aa)    
Predicted Functional Partners:
ENSNVIP00000027645
Family with sequence similarity 118 member A.
      
 0.640
CDA
Cytidine deaminase.
    
   0.629
TRMU
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
      
 0.562
MANSC4
MANSC domain containing 4.
      
 0.560
CLIP3
CAP-Gly domain containing linker protein 3.
      
 0.549
KIAA1958
KIAA1958.
      
 0.539
DDX28
DEAD-box helicase 28.
      
 0.536
ZCCHC17
Zinc finger CCHC-type containing 17.
      
 0.519
LRIT1
Leucine rich repeat, Ig-like and transmembrane domains 1.
      
 0.517
LRIT2
Leucine rich repeat, Ig-like and transmembrane domains 2.
      
 0.506
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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