STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL6A5Collagen type VI alpha 5 chain. (2599 aa)    
Predicted Functional Partners:
ITGA6
Integrin subunit alpha 6.
    
 0.937
ITGB8
Integrin subunit beta 8.
    
 0.912
ITGAV
Integrin subunit alpha V.
   
 0.895
CD44
CD44 molecule (Indian blood group).
    
 0.890
ENSNVIP00000030081
annotation not available
    
 0.887
ITGA9
Integrin subunit alpha 9.
    
 0.887
ENSNVIP00000021409
annotation not available
     
 0.883
ITGA2B
Integrin subunit alpha 2b.
    
 0.874
ITGB6
Integrin subunit beta 6.
    
 0.859
ITGA1
Integrin subunit alpha 1.
    
 0.853
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.