Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRPF40Apre-mRNA processing factor 40 homolog A. (994 aa)    
Predicted Functional Partners:
ENSNVIP00000009884
annotation not available
   
 0.990
ENSNVIP00000009901
annotation not available
   
 0.990
RBM39
RNA binding motif protein 39.
   
 0.984
SF3A1
Splicing factor 3a subunit 1.
   
 0.969
U2SURP
U2 snRNP associated SURP domain containing.
   
 
 0.956
PRPF40B
pre-mRNA processing factor 40 homolog B.
  
 
 
0.945
DDX46
DEAD-box helicase 46.
   
 0.942
SF1
Splicing factor 1.
   
 0.941
SF3B1
Splicing factor 3b subunit 1.
   
 0.930
SRRT
Serrate, RNA effector molecule.
   
 
 0.929
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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