Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CHD7Chromodomain helicase DNA binding protein 7. (3000 aa)    
Predicted Functional Partners:
CHD8
Chromodomain helicase DNA binding protein 8.
   
 
 0.941
CHD9
Chromodomain helicase DNA binding protein 9.
   
    0.863
ENSNVIP00000031759
Catenin beta 1.
    
 0.783
PAICS
annotation not available
      
 0.685
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.679
ENSNVIP00000018412
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 
 0.655
RTF1
RTF1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.654
GARS1
glycyl-tRNA synthetase 1.
    
   0.646
LTBP2
Latent transforming growth factor beta binding protein 2.
    
 0.639
RBBP5
RB binding protein 5, histone lysine methyltransferase complex subunit.
    
 
 0.620
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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