STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCFD1Sec1 family domain containing 1. (636 aa)    
Predicted Functional Partners:
BET1
Bet1 golgi vesicular membrane trafficking protein.
   
 0.996
ENSNVIP00000029762
annotation not available
    
 0.995
ENSNVIP00000011339
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene).
   
 0.989
NSF
N-ethylmaleimide sensitive factor, vesicle fusing ATPase.
   
 0.980
ENSNVIP00000026618
Syntaxin 5.
    
 0.976
ENSNVIP00000031569
annotation not available
    
 0.976
ENSNVIP00000010152
Syntaxin 18.
    
 
 0.972
USO1
USO1 vesicle transport factor.
   
 0.970
YKT6
YKT6 v-SNARE homolog.
    
 0.965
USE1
Unconventional SNARE in the ER 1.
    
 
 0.949
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.