TRAPPC4 protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Experiments

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[Homology]

Score

TRAPPC4

Trafficking protein particle complex 4. (219 aa)

Predicted Functional Partners:

TRAPPC6B

0.998

ENSNVIP00000008929

0.998

TRAPPC2L

0.998

TRAPPC1

0.997

TRAPPC12

0.994

TRAPPC8

0.991

TRAPPC9

0.990

TRAPPC11

0.988

ENSNVIP00000010262

0.986

ENSNVIP00000008221

0.985

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNVIP00000008221	ENSNVIP00000008929	ENSNVIP00000008221	ENSNVIP00000008929	annotation not available	annotation not available	0.969
ENSNVIP00000008221	ENSNVIP00000010262	ENSNVIP00000008221	ENSNVIP00000010262	annotation not available	Trafficking protein particle complex 6A.	0.978
ENSNVIP00000008221	TRAPPC1	ENSNVIP00000008221	ENSNVIP00000005726	annotation not available	Trafficking protein particle complex 1.	0.981
ENSNVIP00000008221	TRAPPC11	ENSNVIP00000008221	ENSNVIP00000006202	annotation not available	Trafficking protein particle complex 11.	0.965
ENSNVIP00000008221	TRAPPC12	ENSNVIP00000008221	ENSNVIP00000020383	annotation not available	Trafficking protein particle complex 12.	0.978
ENSNVIP00000008221	TRAPPC2L	ENSNVIP00000008221	ENSNVIP00000012555	annotation not available	Trafficking protein particle complex 2 like.	0.983
ENSNVIP00000008221	TRAPPC4	ENSNVIP00000008221	ENSNVIP00000004895	annotation not available	Trafficking protein particle complex 4.	0.985
ENSNVIP00000008221	TRAPPC6B	ENSNVIP00000008221	ENSNVIP00000006309	annotation not available	Trafficking protein particle complex 6B.	0.983
ENSNVIP00000008221	TRAPPC8	ENSNVIP00000008221	ENSNVIP00000025332	annotation not available	Trafficking protein particle complex 8.	0.969
ENSNVIP00000008221	TRAPPC9	ENSNVIP00000008221	ENSNVIP00000020280	annotation not available	Trafficking protein particle complex 9.	0.955
ENSNVIP00000008929	ENSNVIP00000008221	ENSNVIP00000008929	ENSNVIP00000008221	annotation not available	annotation not available	0.969
ENSNVIP00000008929	ENSNVIP00000010262	ENSNVIP00000008929	ENSNVIP00000010262	annotation not available	Trafficking protein particle complex 6A.	0.986
ENSNVIP00000008929	TRAPPC1	ENSNVIP00000008929	ENSNVIP00000005726	annotation not available	Trafficking protein particle complex 1.	0.998
ENSNVIP00000008929	TRAPPC11	ENSNVIP00000008929	ENSNVIP00000006202	annotation not available	Trafficking protein particle complex 11.	0.936
ENSNVIP00000008929	TRAPPC12	ENSNVIP00000008929	ENSNVIP00000020383	annotation not available	Trafficking protein particle complex 12.	0.955
ENSNVIP00000008929	TRAPPC2L	ENSNVIP00000008929	ENSNVIP00000012555	annotation not available	Trafficking protein particle complex 2 like.	0.997
ENSNVIP00000008929	TRAPPC4	ENSNVIP00000008929	ENSNVIP00000004895	annotation not available	Trafficking protein particle complex 4.	0.998
ENSNVIP00000008929	TRAPPC6B	ENSNVIP00000008929	ENSNVIP00000006309	annotation not available	Trafficking protein particle complex 6B.	0.993
ENSNVIP00000008929	TRAPPC8	ENSNVIP00000008929	ENSNVIP00000025332	annotation not available	Trafficking protein particle complex 8.	0.992
ENSNVIP00000008929	TRAPPC9	ENSNVIP00000008929	ENSNVIP00000020280	annotation not available	Trafficking protein particle complex 9.	0.989