BBS4 protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

BBS4

Bardet-Biedl syndrome 4. (519 aa)

Predicted Functional Partners:

ENSNVIP00000007065

0.998

BBS7

0.998

BBS9

0.997

ENSNVIP00000021104

0.997

ENSNVIP00000018252

0.996

TTC8

0.988

ENSNVIP00000009900

0.981

ENSNVIP00000027601

0.980

PCM1

0.970

KLHL41

0.964

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BBS4	BBS7	ENSNVIP00000004896	ENSNVIP00000016968	Bardet-Biedl syndrome 4.	Bardet-Biedl syndrome 7.	0.998
BBS4	BBS9	ENSNVIP00000004896	ENSNVIP00000013197	Bardet-Biedl syndrome 4.	Bardet-Biedl syndrome 9.	0.997
BBS4	ENSNVIP00000007065	ENSNVIP00000004896	ENSNVIP00000007065	Bardet-Biedl syndrome 4.	annotation not available	0.998
BBS4	ENSNVIP00000009900	ENSNVIP00000004896	ENSNVIP00000009900	Bardet-Biedl syndrome 4.	annotation not available	0.981
BBS4	ENSNVIP00000018252	ENSNVIP00000004896	ENSNVIP00000018252	Bardet-Biedl syndrome 4.	annotation not available	0.996
BBS4	ENSNVIP00000021104	ENSNVIP00000004896	ENSNVIP00000021104	Bardet-Biedl syndrome 4.	Bardet-Biedl syndrome 2.	0.997
BBS4	ENSNVIP00000027601	ENSNVIP00000004896	ENSNVIP00000027601	Bardet-Biedl syndrome 4.	Leucine zipper transcription factor like 1.	0.980
BBS4	KLHL41	ENSNVIP00000004896	ENSNVIP00000007135	Bardet-Biedl syndrome 4.	Kelch like family member 41.	0.964
BBS4	PCM1	ENSNVIP00000004896	ENSNVIP00000027345	Bardet-Biedl syndrome 4.	Pericentriolar material 1.	0.970
BBS4	TTC8	ENSNVIP00000004896	ENSNVIP00000015210	Bardet-Biedl syndrome 4.	Tetratricopeptide repeat domain 8.	0.988
BBS7	BBS4	ENSNVIP00000016968	ENSNVIP00000004896	Bardet-Biedl syndrome 7.	Bardet-Biedl syndrome 4.	0.998
BBS7	BBS9	ENSNVIP00000016968	ENSNVIP00000013197	Bardet-Biedl syndrome 7.	Bardet-Biedl syndrome 9.	0.999
BBS7	ENSNVIP00000007065	ENSNVIP00000016968	ENSNVIP00000007065	Bardet-Biedl syndrome 7.	annotation not available	0.998
BBS7	ENSNVIP00000009900	ENSNVIP00000016968	ENSNVIP00000009900	Bardet-Biedl syndrome 7.	annotation not available	0.974
BBS7	ENSNVIP00000018252	ENSNVIP00000016968	ENSNVIP00000018252	Bardet-Biedl syndrome 7.	annotation not available	0.998
BBS7	ENSNVIP00000021104	ENSNVIP00000016968	ENSNVIP00000021104	Bardet-Biedl syndrome 7.	Bardet-Biedl syndrome 2.	0.999
BBS7	ENSNVIP00000027601	ENSNVIP00000016968	ENSNVIP00000027601	Bardet-Biedl syndrome 7.	Leucine zipper transcription factor like 1.	0.994
BBS7	KLHL41	ENSNVIP00000016968	ENSNVIP00000007135	Bardet-Biedl syndrome 7.	Kelch like family member 41.	0.981
BBS7	TTC8	ENSNVIP00000016968	ENSNVIP00000015210	Bardet-Biedl syndrome 7.	Tetratricopeptide repeat domain 8.	0.999
BBS9	BBS4	ENSNVIP00000013197	ENSNVIP00000004896	Bardet-Biedl syndrome 9.	Bardet-Biedl syndrome 4.	0.997