TCAP protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TCAP

Titin-cap. (167 aa)

Predicted Functional Partners:

MYOZ2

0.940

MYOZ1

0.937

CSRP3

0.920

TRIM63

0.906

NRAP

0.865

ENSNVIP00000007809

0.806

ENSNVIP00000007830

0.806

ENSNVIP00000007840

0.806

ENSNVIP00000007848

0.806

ENSNVIP00000007863

0.806

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSRP3	MYOZ1	ENSNVIP00000023737	ENSNVIP00000011743	Cysteine and glycine rich protein 3.	Myozenin 1.	0.505
CSRP3	MYOZ2	ENSNVIP00000023737	ENSNVIP00000016204	Cysteine and glycine rich protein 3.	Myozenin 2.	0.946
CSRP3	NRAP	ENSNVIP00000023737	ENSNVIP00000009158	Cysteine and glycine rich protein 3.	Nebulin related anchoring protein.	0.828
CSRP3	TCAP	ENSNVIP00000023737	ENSNVIP00000005323	Cysteine and glycine rich protein 3.	Titin-cap.	0.920
ENSNVIP00000007809	TCAP	ENSNVIP00000007809	ENSNVIP00000005323	annotation not available	Titin-cap.	0.806
ENSNVIP00000007809	TRIM63	ENSNVIP00000007809	ENSNVIP00000030628	annotation not available	Tripartite motif containing 63.	0.686
ENSNVIP00000007830	ENSNVIP00000007863	ENSNVIP00000007830	ENSNVIP00000007863	annotation not available	annotation not available	0.650
ENSNVIP00000007830	TCAP	ENSNVIP00000007830	ENSNVIP00000005323	annotation not available	Titin-cap.	0.806
ENSNVIP00000007830	TRIM63	ENSNVIP00000007830	ENSNVIP00000030628	annotation not available	Tripartite motif containing 63.	0.686
ENSNVIP00000007840	TCAP	ENSNVIP00000007840	ENSNVIP00000005323	annotation not available	Titin-cap.	0.806
ENSNVIP00000007840	TRIM63	ENSNVIP00000007840	ENSNVIP00000030628	annotation not available	Tripartite motif containing 63.	0.686
ENSNVIP00000007848	TCAP	ENSNVIP00000007848	ENSNVIP00000005323	annotation not available	Titin-cap.	0.806
ENSNVIP00000007848	TRIM63	ENSNVIP00000007848	ENSNVIP00000030628	annotation not available	Tripartite motif containing 63.	0.686
ENSNVIP00000007863	ENSNVIP00000007830	ENSNVIP00000007863	ENSNVIP00000007830	annotation not available	annotation not available	0.650
ENSNVIP00000007863	TCAP	ENSNVIP00000007863	ENSNVIP00000005323	annotation not available	Titin-cap.	0.806
ENSNVIP00000007863	TRIM63	ENSNVIP00000007863	ENSNVIP00000030628	annotation not available	Tripartite motif containing 63.	0.686
MYOZ1	CSRP3	ENSNVIP00000011743	ENSNVIP00000023737	Myozenin 1.	Cysteine and glycine rich protein 3.	0.505
MYOZ1	MYOZ2	ENSNVIP00000011743	ENSNVIP00000016204	Myozenin 1.	Myozenin 2.	0.908
MYOZ1	NRAP	ENSNVIP00000011743	ENSNVIP00000009158	Myozenin 1.	Nebulin related anchoring protein.	0.800
MYOZ1	TCAP	ENSNVIP00000011743	ENSNVIP00000005323	Myozenin 1.	Titin-cap.	0.937