Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UBE3DUbiquitin protein ligase E3D. (388 aa)    
Predicted Functional Partners:
DNAAF2
Dynein axonemal assembly factor 2.
    
   0.937
RBBP6
RB binding protein 6, ubiquitin ligase.
    
 0.929
CPSF3
Cleavage and polyadenylation specific factor 3.
    
 
 0.907
KAT8
Lysine acetyltransferase 8.
      
 0.725
ZNF668
Zinc finger protein 668.
      
 0.711
ZNF536
Zinc finger protein 536.
      
 0.702
ENSNVIP00000000578
annotation not available
    
   0.667
ENSNVIP00000020903
annotation not available
    
   0.667
ENSNVIP00000028143
annotation not available
    
   0.667
ENSNVIP00000005897
annotation not available
    
 0.654
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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