Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SHROOM4Shroom family member 4. (1485 aa)    
Predicted Functional Partners:
SKIV2L
Ski2 like RNA helicase.
      
 0.611
ACTL6A
Actin like 6A.
   
 0.585
ACTR8
Actin related protein 8.
    
 0.585
ACTR5
Actin related protein 5.
    
 0.578
ERCC3
ERCC excision repair 3, TFIIH core complex helicase subunit.
    
 0.573
RUVBL1
RuvB like AAA ATPase 1.
    
 0.571
POU3F4
POU class 3 homeobox 4.
    
 
 0.546
PDE6C
Phosphodiesterase 6C.
      
 0.545
UBE3A
Ubiquitin protein ligase E3A.
    
 
 0.537
ALMS1
ALMS1 centrosome and basal body associated protein.
  
 0.518
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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