URB1 protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

URB1

URB1 ribosome biogenesis homolog. (2259 aa)

Predicted Functional Partners:

HEATR1

0.980

CEBPZ

0.972

PDCD11

0.968

NOL8

0.944

DDX24

0.932

NOC2L

0.931

RBM28

0.913

POLR1B

0.910

DDX31

0.910

UTP20

0.901

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEBPZ	DDX24	ENSNVIP00000003615	ENSNVIP00000007317	CCAAT enhancer binding protein zeta.	DEAD-box helicase 24.	0.976
CEBPZ	DDX31	ENSNVIP00000003615	ENSNVIP00000024015	CCAAT enhancer binding protein zeta.	DEAD-box helicase 31.	0.972
CEBPZ	HEATR1	ENSNVIP00000003615	ENSNVIP00000015254	CCAAT enhancer binding protein zeta.	HEAT repeat containing 1.	0.977
CEBPZ	NOC2L	ENSNVIP00000003615	ENSNVIP00000005718	CCAAT enhancer binding protein zeta.	NOC2 like nucleolar associated transcriptional repressor.	0.996
CEBPZ	NOL8	ENSNVIP00000003615	ENSNVIP00000021635	CCAAT enhancer binding protein zeta.	Nucleolar protein 8.	0.417
CEBPZ	PDCD11	ENSNVIP00000003615	ENSNVIP00000021531	CCAAT enhancer binding protein zeta.	Programmed cell death 11.	0.990
CEBPZ	POLR1B	ENSNVIP00000003615	ENSNVIP00000021979	CCAAT enhancer binding protein zeta.	RNA polymerase I subunit B.	0.883
CEBPZ	RBM28	ENSNVIP00000003615	ENSNVIP00000000359	CCAAT enhancer binding protein zeta.	RNA binding motif protein 28.	0.987
CEBPZ	URB1	ENSNVIP00000003615	ENSNVIP00000006338	CCAAT enhancer binding protein zeta.	URB1 ribosome biogenesis homolog.	0.972
CEBPZ	UTP20	ENSNVIP00000003615	ENSNVIP00000012015	CCAAT enhancer binding protein zeta.	UTP20 small subunit processome component.	0.968
DDX24	CEBPZ	ENSNVIP00000007317	ENSNVIP00000003615	DEAD-box helicase 24.	CCAAT enhancer binding protein zeta.	0.976
DDX24	DDX31	ENSNVIP00000007317	ENSNVIP00000024015	DEAD-box helicase 24.	DEAD-box helicase 31.	0.915
DDX24	HEATR1	ENSNVIP00000007317	ENSNVIP00000015254	DEAD-box helicase 24.	HEAT repeat containing 1.	0.863
DDX24	NOC2L	ENSNVIP00000007317	ENSNVIP00000005718	DEAD-box helicase 24.	NOC2 like nucleolar associated transcriptional repressor.	0.981
DDX24	PDCD11	ENSNVIP00000007317	ENSNVIP00000021531	DEAD-box helicase 24.	Programmed cell death 11.	0.964
DDX24	POLR1B	ENSNVIP00000007317	ENSNVIP00000021979	DEAD-box helicase 24.	RNA polymerase I subunit B.	0.811
DDX24	RBM28	ENSNVIP00000007317	ENSNVIP00000000359	DEAD-box helicase 24.	RNA binding motif protein 28.	0.984
DDX24	URB1	ENSNVIP00000007317	ENSNVIP00000006338	DEAD-box helicase 24.	URB1 ribosome biogenesis homolog.	0.932
DDX24	UTP20	ENSNVIP00000007317	ENSNVIP00000012015	DEAD-box helicase 24.	UTP20 small subunit processome component.	0.789
DDX31	CEBPZ	ENSNVIP00000024015	ENSNVIP00000003615	DEAD-box helicase 31.	CCAAT enhancer binding protein zeta.	0.972