STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSNVIP00000006672Tetratricopeptide repeat domain 1. (293 aa)    
Predicted Functional Partners:
VAPA
VAMP associated protein A.
    
 
 0.880
RNF41
Ring finger protein 41.
    
   0.876
ENSNVIP00000000864
annotation not available
    
   0.823
VAPB
VAMP associated protein B and C.
    
 
 0.735
TAL1
TAL bHLH transcription factor 1, erythroid differentiation factor.
    
   0.668
SPSB1
splA/ryanodine receptor domain and SOCS box containing 1.
    
   0.629
SPSB4
splA/ryanodine receptor domain and SOCS box containing 4.
    
   0.629
SPSB2
splA/ryanodine receptor domain and SOCS box containing 2.
    
   0.618
SUGT1
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.
   
    0.531
TOMM70
Translocase of outer mitochondrial membrane 70.
      
 0.492
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.