RNF222 protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RNF222

Ring finger protein 222. (206 aa)

Predicted Functional Partners:

SEZ6L

0.534

PI15

0.443

MUC15

0.432

NUP210

0.415

GABRP

0.401

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GABRP	RNF222	ENSNVIP00000029085	ENSNVIP00000006677	Gamma-aminobutyric acid type A receptor pi subunit.	Ring finger protein 222.	0.401
MUC15	RNF222	ENSNVIP00000021451	ENSNVIP00000006677	Mucin 15, cell surface associated.	Ring finger protein 222.	0.432
NUP210	RNF222	ENSNVIP00000025670	ENSNVIP00000006677	Nucleoporin 210.	Ring finger protein 222.	0.415
PI15	RNF222	ENSNVIP00000019373	ENSNVIP00000006677	Peptidase inhibitor 15.	Ring finger protein 222.	0.443
RNF222	GABRP	ENSNVIP00000006677	ENSNVIP00000029085	Ring finger protein 222.	Gamma-aminobutyric acid type A receptor pi subunit.	0.401
RNF222	MUC15	ENSNVIP00000006677	ENSNVIP00000021451	Ring finger protein 222.	Mucin 15, cell surface associated.	0.432
RNF222	NUP210	ENSNVIP00000006677	ENSNVIP00000025670	Ring finger protein 222.	Nucleoporin 210.	0.415
RNF222	PI15	ENSNVIP00000006677	ENSNVIP00000019373	Ring finger protein 222.	Peptidase inhibitor 15.	0.443
RNF222	SEZ6L	ENSNVIP00000006677	ENSNVIP00000005941	Ring finger protein 222.	Seizure related 6 homolog like.	0.534
SEZ6L	RNF222	ENSNVIP00000005941	ENSNVIP00000006677	Seizure related 6 homolog like.	Ring finger protein 222.	0.534