KDM5A protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KDM5A

Lysine demethylase 5A. (1616 aa)

Predicted Functional Partners:

ATP5F1D

0.911

ATP5F1C

0.911

ENSNVIP00000005858

0.853

ENSNVIP00000008735

0.853

ENSNVIP00000025336

0.853

ATP6

0.853

ENSNVIP00000023027

0.844

EZH2

0.780

KDM6A

0.780

KDM1A

0.772

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP5F1C	ATP5F1D	ENSNVIP00000019336	ENSNVIP00000005020	ATP synthase F1 subunit gamma.	ATP synthase F1 subunit delta.	0.999
ATP5F1C	ATP6	ENSNVIP00000019336	ENSNVIP00000032497	ATP synthase F1 subunit gamma.	ATP synthase F0 subunit 6.	0.995
ATP5F1C	ENSNVIP00000005858	ENSNVIP00000019336	ENSNVIP00000005858	ATP synthase F1 subunit gamma.	annotation not available	0.995
ATP5F1C	ENSNVIP00000008735	ENSNVIP00000019336	ENSNVIP00000008735	ATP synthase F1 subunit gamma.	annotation not available	0.998
ATP5F1C	ENSNVIP00000025336	ENSNVIP00000019336	ENSNVIP00000025336	ATP synthase F1 subunit gamma.	annotation not available	0.997
ATP5F1C	KDM5A	ENSNVIP00000019336	ENSNVIP00000006775	ATP synthase F1 subunit gamma.	Lysine demethylase 5A.	0.911
ATP5F1C	KDM6A	ENSNVIP00000019336	ENSNVIP00000021315	ATP synthase F1 subunit gamma.	Lysine demethylase 6A.	0.945
ATP5F1D	ATP5F1C	ENSNVIP00000005020	ENSNVIP00000019336	ATP synthase F1 subunit delta.	ATP synthase F1 subunit gamma.	0.999
ATP5F1D	ATP6	ENSNVIP00000005020	ENSNVIP00000032497	ATP synthase F1 subunit delta.	ATP synthase F0 subunit 6.	0.997
ATP5F1D	ENSNVIP00000005858	ENSNVIP00000005020	ENSNVIP00000005858	ATP synthase F1 subunit delta.	annotation not available	0.997
ATP5F1D	ENSNVIP00000008735	ENSNVIP00000005020	ENSNVIP00000008735	ATP synthase F1 subunit delta.	annotation not available	0.998
ATP5F1D	ENSNVIP00000025336	ENSNVIP00000005020	ENSNVIP00000025336	ATP synthase F1 subunit delta.	annotation not available	0.997
ATP5F1D	KDM5A	ENSNVIP00000005020	ENSNVIP00000006775	ATP synthase F1 subunit delta.	Lysine demethylase 5A.	0.911
ATP5F1D	KDM6A	ENSNVIP00000005020	ENSNVIP00000021315	ATP synthase F1 subunit delta.	Lysine demethylase 6A.	0.922
ATP6	ATP5F1C	ENSNVIP00000032497	ENSNVIP00000019336	ATP synthase F0 subunit 6.	ATP synthase F1 subunit gamma.	0.995
ATP6	ATP5F1D	ENSNVIP00000032497	ENSNVIP00000005020	ATP synthase F0 subunit 6.	ATP synthase F1 subunit delta.	0.997
ATP6	ENSNVIP00000005858	ENSNVIP00000032497	ENSNVIP00000005858	ATP synthase F0 subunit 6.	annotation not available	0.544
ATP6	ENSNVIP00000008735	ENSNVIP00000032497	ENSNVIP00000008735	ATP synthase F0 subunit 6.	annotation not available	0.989
ATP6	ENSNVIP00000025336	ENSNVIP00000032497	ENSNVIP00000025336	ATP synthase F0 subunit 6.	annotation not available	0.984
ATP6	KDM5A	ENSNVIP00000032497	ENSNVIP00000006775	ATP synthase F0 subunit 6.	Lysine demethylase 5A.	0.853