ENSNVIP00000006803 protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

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Coexpression

Experiments

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[Homology]

Score

ENSNVIP00000006803

annotation not available (627 aa)

Predicted Functional Partners:

LMNA

0.984

SUN2

0.946

EMD

0.945

SUN1

0.934

CASP6

0.915

TMPO

0.895

LMNB1

0.894

ENSNVIP00000012538

0.839

ENSNVIP00000019289

0.839

LBR

0.801

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CASP6	ENSNVIP00000006803	ENSNVIP00000010794	ENSNVIP00000006803	Caspase 6.	annotation not available	0.915
CASP6	LMNA	ENSNVIP00000010794	ENSNVIP00000026533	Caspase 6.	Lamin A/C.	0.950
CASP6	LMNB1	ENSNVIP00000010794	ENSNVIP00000031054	Caspase 6.	Lamin B1.	0.919
EMD	ENSNVIP00000006803	ENSNVIP00000030976	ENSNVIP00000006803	Emerin.	annotation not available	0.945
EMD	ENSNVIP00000012538	ENSNVIP00000030976	ENSNVIP00000012538	Emerin.	annotation not available	0.971
EMD	ENSNVIP00000019289	ENSNVIP00000030976	ENSNVIP00000019289	Emerin.	annotation not available	0.971
EMD	LBR	ENSNVIP00000030976	ENSNVIP00000019499	Emerin.	Lamin B receptor.	0.819
EMD	LMNA	ENSNVIP00000030976	ENSNVIP00000026533	Emerin.	Lamin A/C.	0.992
EMD	LMNB1	ENSNVIP00000030976	ENSNVIP00000031054	Emerin.	Lamin B1.	0.968
EMD	SUN1	ENSNVIP00000030976	ENSNVIP00000004109	Emerin.	Sad1 and UNC84 domain containing 1.	0.793
EMD	SUN2	ENSNVIP00000030976	ENSNVIP00000002029	Emerin.	Sad1 and UNC84 domain containing 2.	0.760
EMD	TMPO	ENSNVIP00000030976	ENSNVIP00000010554	Emerin.	Thymopoietin.	0.529
ENSNVIP00000006803	CASP6	ENSNVIP00000006803	ENSNVIP00000010794	annotation not available	Caspase 6.	0.915
ENSNVIP00000006803	EMD	ENSNVIP00000006803	ENSNVIP00000030976	annotation not available	Emerin.	0.945
ENSNVIP00000006803	ENSNVIP00000012538	ENSNVIP00000006803	ENSNVIP00000012538	annotation not available	annotation not available	0.839
ENSNVIP00000006803	ENSNVIP00000019289	ENSNVIP00000006803	ENSNVIP00000019289	annotation not available	annotation not available	0.839
ENSNVIP00000006803	LBR	ENSNVIP00000006803	ENSNVIP00000019499	annotation not available	Lamin B receptor.	0.801
ENSNVIP00000006803	LMNA	ENSNVIP00000006803	ENSNVIP00000026533	annotation not available	Lamin A/C.	0.984
ENSNVIP00000006803	LMNB1	ENSNVIP00000006803	ENSNVIP00000031054	annotation not available	Lamin B1.	0.894
ENSNVIP00000006803	SUN1	ENSNVIP00000006803	ENSNVIP00000004109	annotation not available	Sad1 and UNC84 domain containing 1.	0.934