PAX9 protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

PAX9

Paired box 9. (342 aa)

Predicted Functional Partners:

KDM5B

0.843

MEOX2

0.779

MSX1

0.773

GCM2

0.698

DLX1

0.681

NKX2-8

0.615

HOXA3

0.594

FOXN1

0.562

MEOX1

0.561

PRRX2

0.543

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

Export your current network:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DLX1	PAX9	ENSNVIP00000008840	ENSNVIP00000006846	Distal-less homeobox 1.	Paired box 9.	0.681
FOXN1	GCM2	ENSNVIP00000022427	ENSNVIP00000013445	Forkhead box N1.	Glial cells missing transcription factor 2.	0.738
FOXN1	HOXA3	ENSNVIP00000022427	ENSNVIP00000015530	Forkhead box N1.	Homeobox A3.	0.619
FOXN1	PAX9	ENSNVIP00000022427	ENSNVIP00000006846	Forkhead box N1.	Paired box 9.	0.562
GCM2	FOXN1	ENSNVIP00000013445	ENSNVIP00000022427	Glial cells missing transcription factor 2.	Forkhead box N1.	0.738
GCM2	PAX9	ENSNVIP00000013445	ENSNVIP00000006846	Glial cells missing transcription factor 2.	Paired box 9.	0.698
HOXA3	FOXN1	ENSNVIP00000015530	ENSNVIP00000022427	Homeobox A3.	Forkhead box N1.	0.619
HOXA3	PAX9	ENSNVIP00000015530	ENSNVIP00000006846	Homeobox A3.	Paired box 9.	0.594
KDM5B	PAX9	ENSNVIP00000019632	ENSNVIP00000006846	Lysine demethylase 5B.	Paired box 9.	0.843
MEOX1	MEOX2	ENSNVIP00000027709	ENSNVIP00000019339	Mesenchyme homeobox 1.	Mesenchyme homeobox 2.	0.891
MEOX1	PAX9	ENSNVIP00000027709	ENSNVIP00000006846	Mesenchyme homeobox 1.	Paired box 9.	0.561
MEOX2	MEOX1	ENSNVIP00000019339	ENSNVIP00000027709	Mesenchyme homeobox 2.	Mesenchyme homeobox 1.	0.891
MEOX2	PAX9	ENSNVIP00000019339	ENSNVIP00000006846	Mesenchyme homeobox 2.	Paired box 9.	0.779
MSX1	PAX9	ENSNVIP00000010212	ENSNVIP00000006846	Msh homeobox 1.	Paired box 9.	0.773
NKX2-8	PAX9	ENSNVIP00000006858	ENSNVIP00000006846	NK2 homeobox 8.	Paired box 9.	0.615
PAX9	DLX1	ENSNVIP00000006846	ENSNVIP00000008840	Paired box 9.	Distal-less homeobox 1.	0.681
PAX9	FOXN1	ENSNVIP00000006846	ENSNVIP00000022427	Paired box 9.	Forkhead box N1.	0.562
PAX9	GCM2	ENSNVIP00000006846	ENSNVIP00000013445	Paired box 9.	Glial cells missing transcription factor 2.	0.698
PAX9	HOXA3	ENSNVIP00000006846	ENSNVIP00000015530	Paired box 9.	Homeobox A3.	0.594
PAX9	KDM5B	ENSNVIP00000006846	ENSNVIP00000019632	Paired box 9.	Lysine demethylase 5B.	0.843