STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRMT44tRNA methyltransferase 44 homolog. (735 aa)    
Predicted Functional Partners:
PUS1
Pseudouridine synthase 1.
   
  
 0.652
METTL1
Methyltransferase like 1.
   
  
 0.615
ENSNVIP00000010472
annotation not available
   
  
 0.580
FTSJ1
FtsJ RNA 2'-O-methyltransferase 1.
   
  
 0.578
METTL21A
Methyltransferase like 21A.
   
  
 0.572
TRMT13
tRNA methyltransferase 13 homolog.
   
  
 0.568
ENSNVIP00000024219
tRNA methyltransferase 6.
   
  
 0.567
WDR4
WD repeat domain 4.
   
  
 0.532
WDR6
WD repeat domain 6.
   
  
 0.522
EEF1AKNMT
eEF1A lysine and N-terminal methyltransferase.
   
  
 0.514
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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