TNRC18 protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

TNRC18

Trinucleotide repeat containing 18. (2951 aa)

Predicted Functional Partners:

ING2

0.866

ENSNVIP00000001583

0.829

ENSNVIP00000017422

0.829

ENSNVIP00000029884

0.752

SAP30

0.727

SAP30L

0.727

ENSNVIP00000001720

0.670

ENSNVIP00000019319

0.594

ENSNVIP00000021402

0.594

RBBP7

0.594

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNVIP00000001583	ENSNVIP00000001720	ENSNVIP00000001583	ENSNVIP00000001720	annotation not available	annotation not available	0.887
ENSNVIP00000001583	ENSNVIP00000017422	ENSNVIP00000001583	ENSNVIP00000017422	annotation not available	annotation not available	0.545
ENSNVIP00000001583	ENSNVIP00000019319	ENSNVIP00000001583	ENSNVIP00000019319	annotation not available	annotation not available	0.595
ENSNVIP00000001583	ENSNVIP00000021402	ENSNVIP00000001583	ENSNVIP00000021402	annotation not available	annotation not available	0.595
ENSNVIP00000001583	ING2	ENSNVIP00000001583	ENSNVIP00000005877	annotation not available	Inhibitor of growth family member 2.	0.907
ENSNVIP00000001583	RBBP7	ENSNVIP00000001583	ENSNVIP00000026797	annotation not available	RB binding protein 7, chromatin remodeling factor.	0.595
ENSNVIP00000001583	SAP30	ENSNVIP00000001583	ENSNVIP00000022903	annotation not available	Sin3A associated protein 30.	0.915
ENSNVIP00000001583	SAP30L	ENSNVIP00000001583	ENSNVIP00000025690	annotation not available	SAP30 like.	0.906
ENSNVIP00000001583	TNRC18	ENSNVIP00000001583	ENSNVIP00000007035	annotation not available	Trinucleotide repeat containing 18.	0.829
ENSNVIP00000001720	ENSNVIP00000001583	ENSNVIP00000001720	ENSNVIP00000001583	annotation not available	annotation not available	0.887
ENSNVIP00000001720	ENSNVIP00000017422	ENSNVIP00000001720	ENSNVIP00000017422	annotation not available	annotation not available	0.887
ENSNVIP00000001720	ENSNVIP00000019319	ENSNVIP00000001720	ENSNVIP00000019319	annotation not available	annotation not available	0.765
ENSNVIP00000001720	ENSNVIP00000021402	ENSNVIP00000001720	ENSNVIP00000021402	annotation not available	annotation not available	0.765
ENSNVIP00000001720	RBBP7	ENSNVIP00000001720	ENSNVIP00000026797	annotation not available	RB binding protein 7, chromatin remodeling factor.	0.765
ENSNVIP00000001720	SAP30	ENSNVIP00000001720	ENSNVIP00000022903	annotation not available	Sin3A associated protein 30.	0.952
ENSNVIP00000001720	SAP30L	ENSNVIP00000001720	ENSNVIP00000025690	annotation not available	SAP30 like.	0.801
ENSNVIP00000001720	TNRC18	ENSNVIP00000001720	ENSNVIP00000007035	annotation not available	Trinucleotide repeat containing 18.	0.670
ENSNVIP00000017422	ENSNVIP00000001583	ENSNVIP00000017422	ENSNVIP00000001583	annotation not available	annotation not available	0.545
ENSNVIP00000017422	ENSNVIP00000001720	ENSNVIP00000017422	ENSNVIP00000001720	annotation not available	annotation not available	0.887
ENSNVIP00000017422	ENSNVIP00000019319	ENSNVIP00000017422	ENSNVIP00000019319	annotation not available	annotation not available	0.595