Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
TRUB1TruB pseudouridine synthase family member 1. (350 aa)    
Predicted Functional Partners:
ENSNVIP00000030061
NHP2 ribonucleoprotein.
  
 0.979
GAR1
GAR1 ribonucleoprotein.
   
 0.972
NOP58
NOP58 ribonucleoprotein.
  
 
 0.971
NOP56
NOP56 ribonucleoprotein.
   
 
 0.967
FBL
Fibrillarin.
   
 
 0.954
PES1
Pescadillo ribosomal biogenesis factor 1.
   
 
 0.939
NOP10
NOP10 ribonucleoprotein.
   
 0.939
NOLC1
Nucleolar and coiled-body phosphoprotein 1.
   
 
 0.933
ENSNVIP00000009279
WD repeat domain 12.
   
 
 0.930
NIFK
Nucleolar protein interacting with the FHA domain of MKI67.
   
 
 0.928
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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