GLB1 protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GLB1

Galactosidase beta 1. (663 aa)

Predicted Functional Partners:

NEU1

0.997

GLA

0.967

CTSA

0.966

GALNS

0.956

NEU4

0.949

ARSA

0.935

NAGA

0.930

GNS

0.929

GBA

0.927

ENSNVIP00000004804

0.924

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARSA	ENSNVIP00000004804	ENSNVIP00000007695	ENSNVIP00000004804	Arylsulfatase A.	annotation not available	0.901
ARSA	GALNS	ENSNVIP00000007695	ENSNVIP00000012500	Arylsulfatase A.	Galactosamine (N-acetyl)-6-sulfatase.	0.905
ARSA	GBA	ENSNVIP00000007695	ENSNVIP00000024909	Arylsulfatase A.	Glucosylceramidase beta.	0.470
ARSA	GLA	ENSNVIP00000007695	ENSNVIP00000018587	Arylsulfatase A.	Galactosidase alpha.	0.938
ARSA	GLB1	ENSNVIP00000007695	ENSNVIP00000007133	Arylsulfatase A.	Galactosidase beta 1.	0.935
ARSA	NAGA	ENSNVIP00000007695	ENSNVIP00000028832	Arylsulfatase A.	alpha-N-acetylgalactosaminidase.	0.824
ARSA	NEU1	ENSNVIP00000007695	ENSNVIP00000019419	Arylsulfatase A.	Neuraminidase 1.	0.898
ARSA	NEU4	ENSNVIP00000007695	ENSNVIP00000023793	Arylsulfatase A.	Neuraminidase 4.	0.892
CTSA	ENSNVIP00000004804	ENSNVIP00000012701	ENSNVIP00000004804	Cathepsin A.	annotation not available	0.507
CTSA	GLB1	ENSNVIP00000012701	ENSNVIP00000007133	Cathepsin A.	Galactosidase beta 1.	0.966
CTSA	NEU1	ENSNVIP00000012701	ENSNVIP00000019419	Cathepsin A.	Neuraminidase 1.	0.970
CTSA	NEU4	ENSNVIP00000012701	ENSNVIP00000023793	Cathepsin A.	Neuraminidase 4.	0.661
ENSNVIP00000004804	ARSA	ENSNVIP00000004804	ENSNVIP00000007695	annotation not available	Arylsulfatase A.	0.901
ENSNVIP00000004804	CTSA	ENSNVIP00000004804	ENSNVIP00000012701	annotation not available	Cathepsin A.	0.507
ENSNVIP00000004804	GBA	ENSNVIP00000004804	ENSNVIP00000024909	annotation not available	Glucosylceramidase beta.	0.420
ENSNVIP00000004804	GLA	ENSNVIP00000004804	ENSNVIP00000018587	annotation not available	Galactosidase alpha.	0.936
ENSNVIP00000004804	GLB1	ENSNVIP00000004804	ENSNVIP00000007133	annotation not available	Galactosidase beta 1.	0.924
ENSNVIP00000004804	GNS	ENSNVIP00000004804	ENSNVIP00000011273	annotation not available	Glucosamine (N-acetyl)-6-sulfatase.	0.910
ENSNVIP00000004804	NAGA	ENSNVIP00000004804	ENSNVIP00000028832	annotation not available	alpha-N-acetylgalactosaminidase.	0.945
ENSNVIP00000004804	NEU1	ENSNVIP00000004804	ENSNVIP00000019419	annotation not available	Neuraminidase 1.	0.930