Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UBFD1Ubiquitin family domain containing 1. (309 aa)    
Predicted Functional Partners:
PSMD12
Proteasome 26S subunit, non-ATPase 12.
   
 0.963
PSMC4
Proteasome 26S subunit, ATPase 4.
   
 0.929
PSMD7
Proteasome 26S subunit, non-ATPase 7.
   
 0.927
PSMC3
Proteasome 26S subunit, ATPase 3.
   
 0.926
PSMD6
Proteasome 26S subunit, non-ATPase 6.
   
 0.917
PSMC5
Proteasome 26S subunit, ATPase 5.
   
 0.915
PSMD13
Proteasome 26S subunit, non-ATPase 13.
   
 0.911
PSMD11
Proteasome 26S subunit, non-ATPase 11.
   
 0.911
PSMD2
Proteasome 26S subunit, non-ATPase 2.
   
 0.908
PSMA4
Proteasome 20S subunit alpha 4.
   
 0.903
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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