STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHRF1PHD and ring finger domains 1. (1629 aa)    
Predicted Functional Partners:
SMG5
SMG5 nonsense mediated mRNA decay factor.
   
    0.703
JMJD6
Jumonji domain containing 6, arginine demethylase and lysine hydroxylase.
    
 
 0.632
ENSNVIP00000013229
annotation not available
    
   0.628
CSNK2A2
Casein kinase 2 alpha 2.
    
   0.628
ENSNVIP00000026782
RNA polymerase II subunit G.
    
   0.628
SCAF1
SR-related CTD associated factor 1.
   
 
 0.596
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 
 0.566
TAOK3
TAO kinase 3.
   
  
 0.551
SPPL3
Signal peptide peptidase like 3.
      
 0.550
APIP
APAF1 interacting protein.
      
 0.536
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
Server load: medium (72%) [HD]