STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDCD6IPProgrammed cell death 6 interacting protein. (855 aa)    
Predicted Functional Partners:
CHMP4B
Charged multivesicular body protein 4B.
   
 0.986
ENSNVIP00000028312
Charged multivesicular body protein 4C.
   
 0.986
CHMP4A
Charged multivesicular body protein 4A.
    
 0.983
MDP1
Magnesium dependent phosphatase 1.
    
 0.966
ENSNVIP00000003468
Centrosomal protein 55.
    
 
 0.966
SH3KBP1
SH3 domain containing kinase binding protein 1.
    
 
 0.939
EGFR
Epidermal growth factor receptor.
    
 
 0.939
ENSNVIP00000009116
annotation not available
   
 0.936
ENSNVIP00000024206
annotation not available
   
 0.936
MVB12B
Multivesicular body subunit 12B.
     
 0.928
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.