ASB18 protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ASB18

Ankyrin repeat and SOCS box containing 18. (436 aa)

Predicted Functional Partners:

ASB12

0.682

ENSNVIP00000000688

0.502

NFKBIA

0.493

COMMD9

0.489

ENSNVIP00000031449

0.484

IQCA1L

0.479

ENSNVIP00000006913

0.479

ASB5

0.479

COMMD10

0.478

CCDC22

0.473

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASB12	ASB18	ENSNVIP00000018894	ENSNVIP00000007524	Ankyrin repeat and SOCS box containing 12.	Ankyrin repeat and SOCS box containing 18.	0.682
ASB12	ASB5	ENSNVIP00000018894	ENSNVIP00000011702	Ankyrin repeat and SOCS box containing 12.	Ankyrin repeat and SOCS box containing 5.	0.590
ASB12	CCDC22	ENSNVIP00000018894	ENSNVIP00000010244	Ankyrin repeat and SOCS box containing 12.	Coiled-coil domain containing 22.	0.605
ASB12	COMMD10	ENSNVIP00000018894	ENSNVIP00000018902	Ankyrin repeat and SOCS box containing 12.	COMM domain containing 10.	0.564
ASB12	COMMD9	ENSNVIP00000018894	ENSNVIP00000013441	Ankyrin repeat and SOCS box containing 12.	COMM domain containing 9.	0.702
ASB12	ENSNVIP00000000688	ENSNVIP00000018894	ENSNVIP00000000688	Ankyrin repeat and SOCS box containing 12.	NEDD8 ubiquitin like modifier.	0.662
ASB12	ENSNVIP00000006913	ENSNVIP00000018894	ENSNVIP00000006913	Ankyrin repeat and SOCS box containing 12.	annotation not available	0.488
ASB12	ENSNVIP00000031449	ENSNVIP00000018894	ENSNVIP00000031449	Ankyrin repeat and SOCS box containing 12.	COMM domain containing 5.	0.699
ASB12	NFKBIA	ENSNVIP00000018894	ENSNVIP00000002748	Ankyrin repeat and SOCS box containing 12.	NFKB inhibitor alpha.	0.507
ASB18	ASB12	ENSNVIP00000007524	ENSNVIP00000018894	Ankyrin repeat and SOCS box containing 18.	Ankyrin repeat and SOCS box containing 12.	0.682
ASB18	ASB5	ENSNVIP00000007524	ENSNVIP00000011702	Ankyrin repeat and SOCS box containing 18.	Ankyrin repeat and SOCS box containing 5.	0.479
ASB18	CCDC22	ENSNVIP00000007524	ENSNVIP00000010244	Ankyrin repeat and SOCS box containing 18.	Coiled-coil domain containing 22.	0.473
ASB18	COMMD10	ENSNVIP00000007524	ENSNVIP00000018902	Ankyrin repeat and SOCS box containing 18.	COMM domain containing 10.	0.478
ASB18	COMMD9	ENSNVIP00000007524	ENSNVIP00000013441	Ankyrin repeat and SOCS box containing 18.	COMM domain containing 9.	0.489
ASB18	ENSNVIP00000000688	ENSNVIP00000007524	ENSNVIP00000000688	Ankyrin repeat and SOCS box containing 18.	NEDD8 ubiquitin like modifier.	0.502
ASB18	ENSNVIP00000006913	ENSNVIP00000007524	ENSNVIP00000006913	Ankyrin repeat and SOCS box containing 18.	annotation not available	0.479
ASB18	ENSNVIP00000031449	ENSNVIP00000007524	ENSNVIP00000031449	Ankyrin repeat and SOCS box containing 18.	COMM domain containing 5.	0.484
ASB18	IQCA1L	ENSNVIP00000007524	ENSNVIP00000001519	Ankyrin repeat and SOCS box containing 18.	IQ motif containing with AAA domain 1 like.	0.479
ASB18	NFKBIA	ENSNVIP00000007524	ENSNVIP00000002748	Ankyrin repeat and SOCS box containing 18.	NFKB inhibitor alpha.	0.493
ASB5	ASB12	ENSNVIP00000011702	ENSNVIP00000018894	Ankyrin repeat and SOCS box containing 5.	Ankyrin repeat and SOCS box containing 12.	0.590