RCVRN protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RCVRN

Recoverin. (202 aa)

Predicted Functional Partners:

GRK1

0.995

RHO

0.975

GRK7

0.964

PDC

0.885

GRK4

0.867

GRK5

0.867

GRK6

0.867

PRPH2

0.850

ENSNVIP00000004337

0.824

GRK3

0.790

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNVIP00000004337	RCVRN	ENSNVIP00000004337	ENSNVIP00000007680	Heat shock protein nuclear import factor hikeshi.	Recoverin.	0.824
GRK1	GRK3	ENSNVIP00000027083	ENSNVIP00000004963	G protein-coupled receptor kinase 1.	G protein-coupled receptor kinase 3.	0.546
GRK1	GRK4	ENSNVIP00000027083	ENSNVIP00000001571	G protein-coupled receptor kinase 1.	G protein-coupled receptor kinase 4.	0.459
GRK1	GRK5	ENSNVIP00000027083	ENSNVIP00000006383	G protein-coupled receptor kinase 1.	G protein-coupled receptor kinase 5.	0.459
GRK1	GRK6	ENSNVIP00000027083	ENSNVIP00000027074	G protein-coupled receptor kinase 1.	G protein-coupled receptor kinase 6.	0.459
GRK1	GRK7	ENSNVIP00000027083	ENSNVIP00000017587	G protein-coupled receptor kinase 1.	G protein-coupled receptor kinase 7.	0.918
GRK1	PDC	ENSNVIP00000027083	ENSNVIP00000011760	G protein-coupled receptor kinase 1.	Phosducin.	0.419
GRK1	PRPH2	ENSNVIP00000027083	ENSNVIP00000015664	G protein-coupled receptor kinase 1.	Peripherin 2.	0.425
GRK1	RCVRN	ENSNVIP00000027083	ENSNVIP00000007680	G protein-coupled receptor kinase 1.	Recoverin.	0.995
GRK1	RHO	ENSNVIP00000027083	ENSNVIP00000012200	G protein-coupled receptor kinase 1.	Rhodopsin.	0.994
GRK3	GRK1	ENSNVIP00000004963	ENSNVIP00000027083	G protein-coupled receptor kinase 3.	G protein-coupled receptor kinase 1.	0.546
GRK3	GRK4	ENSNVIP00000004963	ENSNVIP00000001571	G protein-coupled receptor kinase 3.	G protein-coupled receptor kinase 4.	0.726
GRK3	GRK5	ENSNVIP00000004963	ENSNVIP00000006383	G protein-coupled receptor kinase 3.	G protein-coupled receptor kinase 5.	0.726
GRK3	GRK6	ENSNVIP00000004963	ENSNVIP00000027074	G protein-coupled receptor kinase 3.	G protein-coupled receptor kinase 6.	0.726
GRK3	GRK7	ENSNVIP00000004963	ENSNVIP00000017587	G protein-coupled receptor kinase 3.	G protein-coupled receptor kinase 7.	0.629
GRK3	RCVRN	ENSNVIP00000004963	ENSNVIP00000007680	G protein-coupled receptor kinase 3.	Recoverin.	0.790
GRK3	RHO	ENSNVIP00000004963	ENSNVIP00000012200	G protein-coupled receptor kinase 3.	Rhodopsin.	0.813
GRK4	GRK1	ENSNVIP00000001571	ENSNVIP00000027083	G protein-coupled receptor kinase 4.	G protein-coupled receptor kinase 1.	0.459
GRK4	GRK3	ENSNVIP00000001571	ENSNVIP00000004963	G protein-coupled receptor kinase 4.	G protein-coupled receptor kinase 3.	0.726
GRK4	GRK7	ENSNVIP00000001571	ENSNVIP00000017587	G protein-coupled receptor kinase 4.	G protein-coupled receptor kinase 7.	0.755