STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTN1Reticulon 1. (779 aa)    
Predicted Functional Partners:
RTN4
Reticulon 4.
    
 
 0.888
MAPT
Microtubule associated protein tau.
   
 
 0.813
MANF
Mesencephalic astrocyte derived neurotrophic factor.
   
 
 0.778
LINGO1
Leucine rich repeat and Ig domain containing 1.
   
 0.756
LRCH1
Leucine rich repeats and calponin homology domain containing 1.
    
 0.755
ATN1
Atrophin 1.
      
 0.747
RTN2
Reticulon 2.
   
 
 0.742
CCDC175
Coiled-coil domain containing 175.
      
 0.722
BACE1
Beta-secretase 1.
    
 0.711
BACE2
Beta-secretase 2.
    
 0.701
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.