UCHL1 protein (Neovison vison) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UCHL1

Ubiquitin C-terminal hydrolase L1. (242 aa)

Predicted Functional Partners:

ENSNVIP00000008604

0.952

RPS27A

0.874

ENSNVIP00000022379

0.874

ENSNVIP00000003240

0.821

UBA52

0.821

PSMD14

0.789

ENSNVIP00000000688

0.785

ENSNVIP00000031995

0.765

GFRA1

0.720

ENSNVIP00000004225

0.679

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNVIP00000000688	ENSNVIP00000003240	ENSNVIP00000000688	ENSNVIP00000003240	NEDD8 ubiquitin like modifier.	annotation not available	0.908
ENSNVIP00000000688	ENSNVIP00000004225	ENSNVIP00000000688	ENSNVIP00000004225	NEDD8 ubiquitin like modifier.	SUMO peptidase family member, NEDD8 specific.	0.994
ENSNVIP00000000688	ENSNVIP00000008604	ENSNVIP00000000688	ENSNVIP00000008604	NEDD8 ubiquitin like modifier.	annotation not available	0.878
ENSNVIP00000000688	ENSNVIP00000022379	ENSNVIP00000000688	ENSNVIP00000022379	NEDD8 ubiquitin like modifier.	annotation not available	0.893
ENSNVIP00000000688	PSMD14	ENSNVIP00000000688	ENSNVIP00000008862	NEDD8 ubiquitin like modifier.	Proteasome 26S subunit, non-ATPase 14.	0.837
ENSNVIP00000000688	RPS27A	ENSNVIP00000000688	ENSNVIP00000002722	NEDD8 ubiquitin like modifier.	Ribosomal protein S27a.	0.892
ENSNVIP00000000688	UBA52	ENSNVIP00000000688	ENSNVIP00000023398	NEDD8 ubiquitin like modifier.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.907
ENSNVIP00000000688	UCHL1	ENSNVIP00000000688	ENSNVIP00000007871	NEDD8 ubiquitin like modifier.	Ubiquitin C-terminal hydrolase L1.	0.785
ENSNVIP00000003240	ENSNVIP00000000688	ENSNVIP00000003240	ENSNVIP00000000688	annotation not available	NEDD8 ubiquitin like modifier.	0.908
ENSNVIP00000003240	ENSNVIP00000008604	ENSNVIP00000003240	ENSNVIP00000008604	annotation not available	annotation not available	0.999
ENSNVIP00000003240	ENSNVIP00000022379	ENSNVIP00000003240	ENSNVIP00000022379	annotation not available	annotation not available	0.996
ENSNVIP00000003240	PSMD14	ENSNVIP00000003240	ENSNVIP00000008862	annotation not available	Proteasome 26S subunit, non-ATPase 14.	0.893
ENSNVIP00000003240	RPS27A	ENSNVIP00000003240	ENSNVIP00000002722	annotation not available	Ribosomal protein S27a.	0.996
ENSNVIP00000003240	UCHL1	ENSNVIP00000003240	ENSNVIP00000007871	annotation not available	Ubiquitin C-terminal hydrolase L1.	0.821
ENSNVIP00000004225	ENSNVIP00000000688	ENSNVIP00000004225	ENSNVIP00000000688	SUMO peptidase family member, NEDD8 specific.	NEDD8 ubiquitin like modifier.	0.994
ENSNVIP00000004225	ENSNVIP00000008604	ENSNVIP00000004225	ENSNVIP00000008604	SUMO peptidase family member, NEDD8 specific.	annotation not available	0.515
ENSNVIP00000004225	ENSNVIP00000022379	ENSNVIP00000004225	ENSNVIP00000022379	SUMO peptidase family member, NEDD8 specific.	annotation not available	0.515
ENSNVIP00000004225	PSMD14	ENSNVIP00000004225	ENSNVIP00000008862	SUMO peptidase family member, NEDD8 specific.	Proteasome 26S subunit, non-ATPase 14.	0.634
ENSNVIP00000004225	RPS27A	ENSNVIP00000004225	ENSNVIP00000002722	SUMO peptidase family member, NEDD8 specific.	Ribosomal protein S27a.	0.515
ENSNVIP00000004225	UCHL1	ENSNVIP00000004225	ENSNVIP00000007871	SUMO peptidase family member, NEDD8 specific.	Ubiquitin C-terminal hydrolase L1.	0.679