STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF40Bpre-mRNA processing factor 40 homolog B. (945 aa)    
Predicted Functional Partners:
ENSNVIP00000009884
annotation not available
   
 0.952
ENSNVIP00000009901
annotation not available
   
 0.952
PRPF40A
pre-mRNA processing factor 40 homolog A.
  
 
 
0.945
PRPF39
pre-mRNA processing factor 39.
    
 0.891
ENSNVIP00000016348
annotation not available
    
 0.883
SNRPC
Small nuclear ribonucleoprotein polypeptide C.
    
 0.877
GNB5
G protein subunit beta 5.
    
   0.876
U2AF2
U2 small nuclear RNA auxiliary factor 2.
    
 0.875
SF3A2
Splicing factor 3a subunit 2.
    
 0.856
LUC7L
LUC7 like.
   
 0.839
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.