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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BUD13BUD13 homolog. (629 aa)    
Predicted Functional Partners:
RBMX2
RNA binding motif protein X-linked 2.
   
 0.999
SNIP1
Smad nuclear interacting protein 1.
   
 0.999
PRPF19
pre-mRNA processing factor 19.
    
 
 0.987
CDC5L
Cell division cycle 5 like.
    
 
 0.984
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
    
 
 0.981
MFAP1
Microfibril associated protein 1.
   
   0.976
ENSNVIP00000000520
PHD finger protein 5A.
    
 
 0.974
CRNKL1
Crooked neck pre-mRNA splicing factor 1.
   
 
 0.969
GPKOW
G-patch domain and KOW motifs.
   
 
 0.964
CWC22
CWC22 spliceosome associated protein homolog.
   
 
 0.959
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.