Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRPF38Apre-mRNA processing factor 38A. (312 aa)    
Predicted Functional Partners:
MFAP1
Microfibril associated protein 1.
   
 0.994
TCERG1
Transcription elongation regulator 1.
   
 0.945
ZMAT2
Zinc finger matrin-type 2.
   
 0.935
IK
IK cytokine.
   
 
 0.922
TCERG1L
Transcription elongation regulator 1 like.
   
 0.898
SMU1
SMU1 DNA replication regulator and spliceosomal factor.
   
 
 0.890
RNPS1
RNA binding protein with serine rich domain 1.
   
 
 0.888
ENSNVIP00000031111
annotation not available
   
 
  0.886
WBP4
WW domain binding protein 4.
   
 
 0.879
SRRM2
Serine/arginine repetitive matrix 2.
     
 0.874
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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