Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COL10A1Collagen type X alpha 1 chain. (671 aa)    
Predicted Functional Partners:
MMP13
Matrix metallopeptidase 13.
   
 0.791
PTHLH
Parathyroid hormone like hormone.
      
 0.700
COL2A1
Collagen type II alpha 1 chain.
  
0.653
RUNX2
RUNX family transcription factor 2.
    
 0.620
COL8A2
Collagen type VIII alpha 2 chain.
   
 
  0.615
USH2A
Usherin.
   
 0.578
SP7
Sp7 transcription factor.
    
 0.577
COL4A2
Collagen type IV alpha 2 chain.
  
 
 
0.572
COL4A6
Collagen type IV alpha 6 chain.
  
 
 
0.569
TMC1
Transmembrane channel like 1.
    
 0.554
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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