RBPMS protein (Neovison vison) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

RBPMS

RNA binding protein, mRNA processing factor. (258 aa)

Predicted Functional Partners:

RBFOX1

0.719

RBFOX2

0.719

ESRP1

0.690

ESRP2

0.690

KHDRBS2

0.565

KHDRBS3

0.565

QKI

0.565

KHDRBS1

0.565

ENSNVIP00000031891

0.401

Your Current Organism:

Neovison vison

NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNVIP00000031891	RBPMS	ENSNVIP00000031891	ENSNVIP00000008191	Synuclein gamma.	RNA binding protein, mRNA processing factor.	0.401
ESRP1	ESRP2	ENSNVIP00000001808	ENSNVIP00000011272	Epithelial splicing regulatory protein 1.	Epithelial splicing regulatory protein 2.	0.881
ESRP1	QKI	ENSNVIP00000001808	ENSNVIP00000023331	Epithelial splicing regulatory protein 1.	QKI, KH domain containing RNA binding.	0.679
ESRP1	RBFOX2	ENSNVIP00000001808	ENSNVIP00000004621	Epithelial splicing regulatory protein 1.	RNA binding fox-1 homolog 2.	0.564
ESRP1	RBPMS	ENSNVIP00000001808	ENSNVIP00000008191	Epithelial splicing regulatory protein 1.	RNA binding protein, mRNA processing factor.	0.690
ESRP2	ESRP1	ENSNVIP00000011272	ENSNVIP00000001808	Epithelial splicing regulatory protein 2.	Epithelial splicing regulatory protein 1.	0.881
ESRP2	QKI	ENSNVIP00000011272	ENSNVIP00000023331	Epithelial splicing regulatory protein 2.	QKI, KH domain containing RNA binding.	0.490
ESRP2	RBFOX2	ENSNVIP00000011272	ENSNVIP00000004621	Epithelial splicing regulatory protein 2.	RNA binding fox-1 homolog 2.	0.661
ESRP2	RBPMS	ENSNVIP00000011272	ENSNVIP00000008191	Epithelial splicing regulatory protein 2.	RNA binding protein, mRNA processing factor.	0.690
KHDRBS1	KHDRBS2	ENSNVIP00000031542	ENSNVIP00000017214	KH RNA binding domain containing, signal transduction associated 1.	KH RNA binding domain containing, signal transduction associated 2.	0.882
KHDRBS1	KHDRBS3	ENSNVIP00000031542	ENSNVIP00000020738	KH RNA binding domain containing, signal transduction associated 1.	KH RNA binding domain containing, signal transduction associated 3.	0.939
KHDRBS1	RBFOX1	ENSNVIP00000031542	ENSNVIP00000000903	KH RNA binding domain containing, signal transduction associated 1.	RNA binding fox-1 homolog 1.	0.482
KHDRBS1	RBFOX2	ENSNVIP00000031542	ENSNVIP00000004621	KH RNA binding domain containing, signal transduction associated 1.	RNA binding fox-1 homolog 2.	0.699
KHDRBS1	RBPMS	ENSNVIP00000031542	ENSNVIP00000008191	KH RNA binding domain containing, signal transduction associated 1.	RNA binding protein, mRNA processing factor.	0.565
KHDRBS2	KHDRBS1	ENSNVIP00000017214	ENSNVIP00000031542	KH RNA binding domain containing, signal transduction associated 2.	KH RNA binding domain containing, signal transduction associated 1.	0.882
KHDRBS2	KHDRBS3	ENSNVIP00000017214	ENSNVIP00000020738	KH RNA binding domain containing, signal transduction associated 2.	KH RNA binding domain containing, signal transduction associated 3.	0.992
KHDRBS2	RBFOX1	ENSNVIP00000017214	ENSNVIP00000000903	KH RNA binding domain containing, signal transduction associated 2.	RNA binding fox-1 homolog 1.	0.432
KHDRBS2	RBFOX2	ENSNVIP00000017214	ENSNVIP00000004621	KH RNA binding domain containing, signal transduction associated 2.	RNA binding fox-1 homolog 2.	0.432
KHDRBS2	RBPMS	ENSNVIP00000017214	ENSNVIP00000008191	KH RNA binding domain containing, signal transduction associated 2.	RNA binding protein, mRNA processing factor.	0.565
KHDRBS3	KHDRBS1	ENSNVIP00000020738	ENSNVIP00000031542	KH RNA binding domain containing, signal transduction associated 3.	KH RNA binding domain containing, signal transduction associated 1.	0.939