Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HDAC6Histone deacetylase 6. (1160 aa)    
Predicted Functional Partners:
VCP
Valosin containing protein.
   
 0.980
CTTN
Cortactin.
    
 0.962
SQSTM1
Sequestosome 1.
    
 
 0.951
EP300
E1A binding protein p300.
    
 0.937
TARDBP
TAR DNA binding protein.
   
 0.928
ENSNVIP00000002727
CF transmembrane conductance regulator.
   
 0.922
ENSNVIP00000008604
annotation not available
    
  0.912
SIRT2
Sirtuin 2.
    
 0.906
EGFR
Epidermal growth factor receptor.
    
 
 0.897
MAPT
Microtubule associated protein tau.
    
 
 0.891
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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