STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMP13Matrix metallopeptidase 13. (470 aa)    
Predicted Functional Partners:
TIMP2
TIMP metallopeptidase inhibitor 2.
   
 0.999
MMP14
Matrix metallopeptidase 14.
  
0.906
MMP16
Matrix metallopeptidase 16.
  
 
0.902
PLG
Plasminogen.
   
 0.861
CTSV
Cathepsin V.
   
 
 0.832
ADAMTS5
ADAM metallopeptidase with thrombospondin type 1 motif 5.
   
  
 0.800
ADAMTS4
ADAM metallopeptidase with thrombospondin type 1 motif 4.
   
 
 0.798
COL2A1
Collagen type II alpha 1 chain.
   
 0.794
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 0.767
COL10A1
Collagen type X alpha 1 chain.
   
 0.750
Your Current Organism:
Neovison vison
NCBI taxonomy Id: 452646
Other names: American mink, Mustela vison, N. vison, mink
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.