STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
aspCPutative aspartate aminotransferase. (412 aa)    
Predicted Functional Partners:
gltB
Putative glutamate synthase large subunit.
  
 
 0.951
pheA
Putative prephenate dehydratase.
 
 
 0.951
KSE_57560
Putative prephenate dehydrogenase.
 
 
 0.925
mdh
Putative malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
 0.923
argG
Putative argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
 0.917
KSE_64580
Similar to Putative aminotransferase B PatB in Bacillus subtilis (Q08432).
 
  
0.914
KSE_28950
Putative delta-1-pyrroline-5-carboxylate dehydrogenase; Protein synonym:pyrroline-5-carboxylate dehydrogenase.
   
 0.912
KSE_55740
Putative delta-1-pyrroline-5-carboxylate dehydrogenase; Protein synonym:pyrroline-5-carboxylate dehydrogenase.
   
 0.912
purA
Putative adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
  
 0.910
gdhA
Putative NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.909
Your Current Organism:
Kitasatospora setae
NCBI taxonomy Id: 452652
Other names: K. setae KM-6054, Kitasatospora setae KM-6054, Kitasatospora setae str. KM-6054, Kitasatospora setae strain KM-6054
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