STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
virB4Type IV secretory pathway VirB4 component; Secretion. (805 aa)    
Predicted Functional Partners:
virB8
Type IV secretory pathway VirB8 component.
 
 
 0.979
virB1
Type IV secretion system protein VirB1.
 
   
 0.972
virB3
Type IV secretory pathway VirB3 component.
  
 
 0.970
virB6
Type IV secretory pathway VirB6 component.
 
  
 0.953
virB9
Type IV secretory pathway VirB9 component; Secretion pore.
 
  
 0.928
virD4
Type IV secretory pathway VirD4 component; Transport.
 
  
 0.927
virB10
Type IV secretory pathway VirB10 component; Pore.
 
  
 0.927
virB11
Type IV secretory pathway VirB11 component.
 
  
 0.908
virB2
Type IV secretory pathway VirB2 component; Pilin.
   
 
 0.833
virB5
Type IV secretory pathway VirB5 component.
     
 0.798
Your Current Organism:
Sphingobium japonicum
NCBI taxonomy Id: 452662
Other names: S. japonicum UT26S, Sphingobium japonicum UT26, Sphingobium japonicum UT26S, Sphingobium japonicum str. UT26S, Sphingobium japonicum strain UT26S
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.