Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BAI97550.1 | BAI97551.1 | SJA_C1-27160 | SJA_C1-27170 | Hypothetical protein. | DEAD/DEAH box helicase-like protein / superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | 0.773 |
BAI97550.1 | rplA | SJA_C1-27160 | SJA_C1-27150 | Hypothetical protein. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.642 |
BAI97550.1 | rplK | SJA_C1-27160 | SJA_C1-27140 | Hypothetical protein. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.642 |
BAI97551.1 | BAI97550.1 | SJA_C1-27170 | SJA_C1-27160 | DEAD/DEAH box helicase-like protein / superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | Hypothetical protein. | 0.773 |
BAI97551.1 | rplA | SJA_C1-27170 | SJA_C1-27150 | DEAD/DEAH box helicase-like protein / superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.771 |
BAI97551.1 | rplK | SJA_C1-27170 | SJA_C1-27140 | DEAD/DEAH box helicase-like protein / superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.833 |
rplA | BAI97550.1 | SJA_C1-27150 | SJA_C1-27160 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Hypothetical protein. | 0.642 |
rplA | BAI97551.1 | SJA_C1-27150 | SJA_C1-27170 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | DEAD/DEAH box helicase-like protein / superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | 0.771 |
rplA | rplK | SJA_C1-27150 | SJA_C1-27140 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.999 |
rplK | BAI97550.1 | SJA_C1-27140 | SJA_C1-27160 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Hypothetical protein. | 0.642 |
rplK | BAI97551.1 | SJA_C1-27140 | SJA_C1-27170 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | DEAD/DEAH box helicase-like protein / superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | 0.833 |
rplK | rplA | SJA_C1-27140 | SJA_C1-27150 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.999 |