STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bioF-28-amino-7-oxononanoate synthase; Serine palmitoyltransferase (EC 2.3.1.50) / 7-keto-8-aminopelargonate synthetase or related enzyme. (405 aa)    
Predicted Functional Partners:
bioA
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.969
bioF
8-amino-7-oxononanoate synthase; 7-keto-8-aminopelargonate synthetase or related enzyme.
  
  
 
0.922
bioD
Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
 
  
 0.865
bioB
Biotin synthetase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
 0.727
BAI98168.1
Putative acyl-CoA synthetase; AMP-forming / AMP-acid ligase II.
 
 0.691
BAI97607.1
Acyl carrier protein.
 
  
 0.688
BAI97499.1
Hypothetical protein.
 
   
 0.685
BAI97560.1
Putative nucleoside-diphosphate-sugar epimerase.
 
  
 0.604
ribD
5-amino-6-(5-phosphoribosylamino)uracil reductase; Bifunctional protein; pyrimidine deaminase.
     
 0.530
BAI97609.1
Signal transduction histidine kinase.
     
 0.521
Your Current Organism:
Sphingobium japonicum
NCBI taxonomy Id: 452662
Other names: S. japonicum UT26S, Sphingobium japonicum UT26, Sphingobium japonicum UT26S, Sphingobium japonicum str. UT26S, Sphingobium japonicum strain UT26S
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