STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAI98188.1Uncharacterized protein conserved in bacteria; Belongs to the UPF0335 family. (80 aa)    
Predicted Functional Partners:
BAI98187.1
Uncharacterized protein conserved in bacteria.
       0.790
BAI96391.1
Uncharacterized protein conserved in bacteria.
  
   
 0.779
BAI98189.1
Conserved hypothetical protein; Belongs to the UPF0145 family.
       0.776
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.742
BAI96085.1
Uncharacterized protein conserved in bacteria.
  
   
 0.735
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
       0.688
BAI96483.1
Inactivated superfamily I helicase.
  
     0.666
BAI98190.1
Conserved hypothetical protein.
       0.631
BAI98172.1
NADH:ubiquinone oxidoreductase 17.2 kD subunit.
  
   
 0.592
rpsU
Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
     0.570
Your Current Organism:
Sphingobium japonicum
NCBI taxonomy Id: 452662
Other names: S. japonicum UT26S, Sphingobium japonicum UT26, Sphingobium japonicum UT26S, Sphingobium japonicum str. UT26S, Sphingobium japonicum strain UT26S
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.